Tutorials

• Training DeepRUOTv2 version
  • Training DeepRUOTv2
  • Evaluation
• Downstram Analysis (v2)
  • Convert adata to csv
  • Load config
  • Load data and model
  • Dim reduction (Optional)
  • Plot Velocity
  • Fit Potential
  • Calculate Fate Probability
  • Select transition genes
  • Growth Rate Analysis
  • Interpolation
  • GRN
• Simulation gene regulatory network (v1)
  • PreTrain velocity and growth
  • Pretrain score
  • Train
• Mouse hematopoiesis (v1)
  • PreTrain velocity and growth
  • Pretrain score
  • Train
• EMT (v1)
  • PreTrain velocity and growth
  • Pretrain score
  • Train
• Gaussian mixture model (20D) (v1)
  • PreTrain velocity and growth
  • Pretrain score
  • Train