DeepRUOT
Contents:
Documentation home
Installation
Tutorials
Training DeepRUOTv2 version
Training DeepRUOTv2
Evaluation
Downstram Analysis (v2)
Convert adata to csv
Load config
Load data and model
Dim reduction (Optional)
Plot Velocity
Fit Potential
Calculate Fate Probability
Select transition genes
Growth Rate Analysis
Interpolation
GRN
Simulation gene regulatory network (v1)
PreTrain velocity and growth
Pretrain score
Train
Mouse hematopoiesis (v1)
PreTrain velocity and growth
Pretrain score
Train
EMT (v1)
PreTrain velocity and growth
Pretrain score
Train
Gaussian mixture model (20D) (v1)
PreTrain velocity and growth
Pretrain score
Train
Contact information
References
License
GitHub
DeepRUOT
Tutorials
Simulation gene regulatory network (v1)
View page source
Simulation gene regulatory network (v1)
PreTrain velocity and growth
Pretrain score
Train