DeepRUOT

Contents:

  • Documentation home
  • Installation
  • Tutorials
    • Training DeepRUOTv2 version
      • Training DeepRUOTv2
      • Evaluation
    • Downstram Analysis (v2)
      • Convert adata to csv
      • Load config
      • Load data and model
      • Dim reduction (Optional)
      • Plot Velocity
      • Fit Potential
      • Calculate Fate Probability
      • Select transition genes
      • Growth Rate Analysis
      • Interpolation
      • GRN
    • Simulation gene regulatory network (v1)
      • PreTrain velocity and growth
      • Pretrain score
      • Train
    • Mouse hematopoiesis (v1)
      • PreTrain velocity and growth
      • Pretrain score
      • Train
    • EMT (v1)
      • PreTrain velocity and growth
      • Pretrain score
      • Train
    • Gaussian mixture model (20D) (v1)
      • PreTrain velocity and growth
      • Pretrain score
      • Train
  • Contact information
  • References
  • License
  • GitHub
DeepRUOT
  • Welcome to DeepRUOT’s documentation!
  • View page source

Welcome to DeepRUOT’s documentation!

Contents:

  • Documentation home
  • Installation
    • DeepRUOTv2 version
    • DeepRUOTv1 version
  • Tutorials
    • Training DeepRUOTv2 version
    • Downstram Analysis (v2)
    • Simulation gene regulatory network (v1)
    • Mouse hematopoiesis (v1)
    • EMT (v1)
    • Gaussian mixture model (20D) (v1)
  • Contact information
  • References
  • License
  • GitHub
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